My scan is done, I found a bunch of "pup" stuff through my malware detection (99 to be exact)
The issue could come from somewhere else but not announce itself til later. Then the popups come up. Most tricky are the popups that insert the name of a site you use and trust (such as WS)
they do this because they feel it makes them appear more legitimate. They are not. Do not try to open or click the links they encourage you to go to. Instead, do as I did, x out of everything, shut down every application you are running, and run your virus and malware programs. Find the little bugger, remove according to your program's instructions, restart if recommended by your program.
Again, this could be a WS issue, but it is just as likely if not MORE likely that when these kinds of things occur, they are things you picked up elsewhere, they sat quietly waiting til you visited a site you frequent and then popped up.