I presented three statement that I believe are independently verifiable. 1. DNA has been found in 3 locations (on both sides of her JonBenet's leggings and in her underwear) 2. The killer was in almost assuredly in contact with these three locations. (regardless of who the killer is, even if it is the Ramseys) and 3. It is extremely unlikely (approaching impossible) that the DNA is from secondary transfer. Here is a scholarly article that supports this last statement http://www.bioforensics.com/conference07/Transfer/SecondaryTransferStudy.pdf
Which of these statements do you disagree with?
I personally believe it was secondary transfer. Don't forget that we are dealing with a child here, and the article that you reference is dealing with adults in an experiment.
Kids can get "down and dirty" and "up close and personal" in their contact with other kids and pick up significant DNA.
Further, although there appears to be some confusion as to whether LCN DNA testing was used by the lab, I can see only one link that indicates regular DNA testing was used. Many links seem to indicate that LCN was used.
http://www.dailycamera.com/news/2008/jul/09/ramsey-breakthrough-comes-touch-dna/
Here are some highlights from an article on secondary transfer:
Secondary transfer refers to the fact that, through physical contact with other people, individuals can inadvertently carry and deposit other peoples DNA onto objects of evidence. For example, two people shaking hands will transfer their own DNA to each others hands. If each then goes on to touch another object such as a coffee mug, baseball bat, knife etc., they could transfer the others skin cells to the object. If that object is a murder weapon, the identification of DNA through LCN could prove problematic and misleading.
Variable shedding refers to the extent to which different people shed their skin cells in different quantities under different circumstances. Some people are more likely than others to leave behind their DNA in the form of skin cells. Through research at the FSS, it has been found that there are, for example, heavy shedders, medium shedders, and light shedders. Thus, the last person to touch a particular object may not leave the most DNA or strongest profile.
The amount of DNA deposited can also be affected by certain actions taken by the individual. Washing of ones hands will, for a period of time, decrease the amount of skin cells a person deposits on other objects. Additionally, the amount of perspiration exerted at the time the object is being held may also affect the amount of skin cells that are deposited. Both of these scenarios could adversely affect results upon LCN-DNA analysis.
Given the nature of variable shedding and secondary transfer, the risk of obtaining a mixture is increased when applying a technology with increased sensitivity such as LCN. It is impossible to amplify the right DNA profile because all of the DNA that is contained in a biological evidence sample will be amplified.
Source: http://www.ncjrs.gov/pdffiles1/nij/grants/203971.pdf
And finally, since the DA has not released exactly what kind of "match" the DNA on the leggings was we can only guess.
My guess is that is a low marker match, perhaps similar to the fingernail DNA.