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When insects or animals interact with bones, they typically leave evidence. It's microscopic. The method I was trained in involves using a thin layer of gold on the bones and a special, high power microscope. Since then, they have even more powerful scopes.
There would certainly be organic matter from the bugs. The clothing showed no evidence of the byproducts of decomp, so she decomposed somewhere without that set of clothing.
I agree with those saying he put her into one of his large hunting coolers (probably wrapped in something). I think that if bleach or peroxide or similar were poured onto her that this too would be detectable in the bones (if she was left to decompose with those chemicals applied). He likely rewrapped her before transporting her (leaving behind the hair). Knowing Barry, he probably just tipped the contents of the first package into a tarp or something.
The part that's mystifying me, a bit, is how he managed to transport her skeleton to the grave site and whether the bones were scattered in a manner consistent with the bones being still somewhat intact (held together by cartelige fibers?) It has occurred to me that he may have simply dumped what was in the container (unwrapped) at the burial site. We don't know when he put the bones there. They could have sun bleached in situ. Being 3 feet under sandy soil out there would result in fairly warm temperatures in the summer. If the bones were scattered by animals, the most likely animals would be birds and so far, no mention of that in the forensic reports (which have not been fully released).
Microscope marks on the bones should also give evidence of any birds or other wild creatures interacting with the bones. I can see how they might leave that part out, as it's not relevant to establishing guilt and would be hard for family members to read, until they are ready to know all the details.
IMO
Those spa chemicals he said Suzanne asked him to pick up that day on his way home, could they produce the results being discussed?
I’m convinced she was put into one of his hunting coolers too. He’s so predictable in some ways and it would be a logical choice. Besides the fact they are said to be missing.