Just a few thoughts:
Owner of house is not a concern to me. I bought my first house before my husband and I were married. Never changed the title until it was sold many years later. Just wasn't a priority, or something I worried about.
The red shirt, I don't think most young people would sleep in the clothing they plan to wear the next day to work. Thus if it's missing, it's likely on her, or was put in bag/backpack, etc to take to work with her. Was the fair to be after work? Or part of work? I can't remember.
The dogs. If you ask a hundred dog owners how they do such and such with their dog, you're likely to get 100 different answers. People do what they want, and what works for them. No set rules on what to do. People don't always walk their dogs on a leash either. Many turn them out, and the dogs don't leave the yard, or have a fenced in yard. In the country, you might even have dogs running around the neighborhood, and that's normal for their area. So dogs could have gone out that morning before she disappeared.
The transportation to and from work is an issue for me. I don't think she was planning to walk/jog all that way to work during a storm, or in perfect weather. That's an awfully long trek when you then have to work.
The contacts aren't really an issue with me either. I would have no idea how many pairs of contacts my kids have. I know they both wear them, and both have glasses. But whether they had the contacts in or not, no idea. And even though some take their contacts our each night, not everyone does. There was some brand that one of my kids wore that were designed to be OK left in.... I don't think contact wearers have just a pair or so of contacts. But, I could be wrong.
Are her work shoes missing? Are you jogging/running shoes the same as her work shoes? I mean you typically don't got for a job/run in sandles, or flipflops, but would those have been acceptable footwear at work? And some people do wear sneakers to work. I wonder what the normal was for Mollie?
I wonder what the coworkers thought when she didn't come to work? Did any of them try to contact her? Did her boss try to contact her? I don't know, but it's possible the boss didn't. Just going from memory of when I was working, I didn't call anyone if they hadn't shown up for work. I sure didn't call their family looking for them. But I don't know what the policy was normally like at her work, or what was done that morning when Mollie failed to report to work.
And lastly, for now, the dogs and whether they would be protective, would bark, would bite, etc. There was a show on that. The owners were asked what they thought their dog would do if the owner was attacked, the majority thought the dogs would help them. So a staged attack happened, very few of the dogs actually tried to protect the owner. Some ran and hid. Some were friendly towards the attacker. Some did bark, others didn't. So useless to guess what those 2 dogs would or wouldn't have done.