Not necessarily the cover-up. But, you do wonder about JF. First, you have the fabricated story of being able to read the note through the door(IMO). Then you add that he was the one that “discovered” the open butler pantry door, even though French, Reichenbach and JR all reported that all doors were locked and secured.
"Fernie seemed to recall that someone, John Ramsey he thought, had said that the doors to the home had been checked the previous evening and that all had been dead-bolted and securely locked. Ramsey had checked the doors again that morning to be certain that JonBenét had not gotten out of the house. At one point that morning, the time uncertain, but as police were processing the scene, Fernie reported that a draft was coming through the house, and he located the source: the door on the north side of the house by the Butler Pantry was standing open, and he shut it." from "Foreign Faction: Who Really Kidnapped JonBenet?" by A. James Kolar
Hmmmm. Not buying it.
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Okay. I never really thought he was lying about reading the note through the door; it's interesting and possible, but why would he lie about something like that? If it's not necessarily the cover-up, do you think he was simply trying to insert himself into the case more than what he was? Trying to give himself a bigger part in it, so to speak?