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The Australian has a summary:
http://resources.news.com.au/files/2015/10/21/1227577/706255-151022murders.pdf
Notice what the summary says:
That they had to wait for a tip to put two and two together implies they didn't DNA test at least one of the bodies: otherwise they would have noticed that the two were related.
Khandalyce's body was found in July, so if they had sequenced both of the remains as a matter of course and put them into Crimtrac, they would have noticed they were related as soon as Khandalyce's results were entered.
http://resources.news.com.au/files/2015/10/21/1227577/706255-151022murders.pdf
Notice what the summary says:
Call to Crime Stoppers nominated Khandalyce as possibly the girl in the suitcase. Caller says she and her mother have not been seen for a long time.
That they had to wait for a tip to put two and two together implies they didn't DNA test at least one of the bodies: otherwise they would have noticed that the two were related.
Khandalyce's body was found in July, so if they had sequenced both of the remains as a matter of course and put them into Crimtrac, they would have noticed they were related as soon as Khandalyce's results were entered.